Comparative transcriptome analysis reveals insights into the ...
2016年1月7日 · In this study, we sequenced the transcriptomes of two marine haplosclerid sponges belonging to Demospongiae, the largest and most diverse class within phylum Porifera and compared their gene...
Novel reference transcriptomes for the sponges
2020年11月20日 · Here, we generated reference transcriptomes for two common and cosmopolitan Indo-Pacific sponge species: Carteriospongia foliascens and Cliona orientalis. We also created a reference transcriptome for the primary symbiont of …
Here, we generated reference transcriptomes for two common and cosmopolitan Indo-Pacific sponge species: Carteriospongia foliascens and Cliona orientalis. We also created a reference transcriptome for the primary symbiont of C. orientalis—Gerakladium endoclionum. Topic Editor: Steve Vollmer. Brian W. Strehlow [email protected].
Genomic insights into the marine sponge microbiome
2012年7月30日 · The first metagenomic analysis of sponge microbiota, revealing insights into mechanisms of bacterium–sponge interactions and highlighting ANK-containing proteins as putative symbiosis factors.
Transcriptome Changes during the Life Cycle of the Red Sponge,
2015年10月20日 · In this study, we compare new transcriptome datasets for three life cycle stages of the red sponge (Mycale phyllophila) to test whether gene expression (as in the model poriferan, Amphimedon queenslandica) also varies more after settlement and metamorphosis.
Holo-Transcriptome Sequences From the Tropical Marine Sponge …
2022年5月16日 · Here we present the assembled and annotated holo-transcriptome of the common Florida reef sponge from the species Cinachyrella alloclada. After Illumina high-throughput sequencing, the data assembled using Trinity v2.5 confirmed a highly symbiotic organism, with the complexity of high microbial abundance sponges.
De novo transcriptome assembly for two color types of the marine sponge …
2021年3月29日 · Abstract. Despite the ecological importance and the potential pharmacological application of the sponge Mycale (Carmia) cecilia, it is uncertain whether the body-color variation, even in individuals coexisting in the same area, is due to intraspecific phenotypic plasticity or corresponds to taxonomic divergence.
Ribosomal RNA-Depletion Provides an Efficient Method for
2022年7月27日 · In this transcriptome analysis of the four dominant partners in the marine sponge A. queenslandica holobiont, we sought to identify which of the RNA-Seq approaches that we compared yielded the highest depth and coverage for genes expressed in both the sponge host and its three proteobacterial symbionts. Under conditions used in this study — i ...
A de novo transcriptome assembly for the bath sponge
2019年12月18日 · We report a transcriptome acquisition for the bath sponge Spongia officinalis, a non-model marine organism that hosts rich symbiotic microbial communities. To this end, a pipeline was developed to efficiently separate between bacterial expressed genes from those of eukaryotic origin.
Frontiers | Transcriptional activity of the giant barrel sponge ...
2015年4月27日 · Quantifying the functional information (i.e., transcripts) of processes driven by sponge-associated prokaryotes and the environmental effects on those processes that influence both biogeochemical cycling and host-microbe interactions is essential to fully understand the multiple roles of sponges in benthic marine ecosystems.